Subject: Marine Geospatial Ecology Tools (MGET) help
Text archives
| From: | "Jason Roberts" <> |
|---|---|
| To: | "'Weber, Marc'" <> |
| Cc: | <> |
| Subject: | RE: [mget-help] mget statistics toolbox |
| Date: | Tue, 18 Mar 2014 13:37:23 -0400 |
Hi Marc, Sorry about this. It sounds like there is an installation problem, probably with MGET but possibly with R. Unfortunately I cannot determine the root cause without knowing more information. Could you please: 1. Save the attached Python script to your Windows desktop. 2. Double click on it to run it. 3. It will create a file on the desktop called GetMoreInformation.txt. Please email me that file. Thank you, Jason From: Weber, Marc [mailto:] Hi- I have mget toolbox installed, and I’m an R user with R 3.0.2 installed. When I try to run any of the tools using R in the mget statistics toolbox, however, nothing happens – the tools run successfully, but no R window is initialized, no output file is generated if specified. I’m guessing there is something wrong in environment variables (I’m running Windows 7), but I don’t see any mention of issues like this in documentation. Thanks, --------------------------------------------- Geographer |
outputTextFile = os.path.join(os.path.dirname(__file__),
os.path.splitext(os.path.basename(__file__))[0] + '.txt')
f = open(outputTextFile, 'w')
f.write(__file__ + '\n')
f.write(sys.executable + '\n')
sitePackagesDir = os.path.join(os.path.dirname(sys.executable), 'Lib',
'site-packages')
f.write(sitePackagesDir + ' : ' + repr(os.path.isdir(sitePackagesDir)) + '\n')
f.write(os.path.join(sitePackagesDir, '_GeoEcoArcGISHelper.pyd') + ' : ' +
repr(os.path.isdir(os.path.join(sitePackagesDir, '_GeoEcoArcGISHelper.pyd')))
+ '\n')
f.write(os.path.join(sitePackagesDir, 'GeoEco') + ' : ' +
repr(os.path.isdir(os.path.join(sitePackagesDir, 'GeoEco'))) + '\n')
f.write(sys.version + '\n')
f.write(repr(glob.glob('C:\\*')) + '\n')
if os.path.isdir(sitePackagesDir):
f.write('\n')
f.write(repr(glob.glob(sitePackagesDir + '\\*')) + '\n')
installedFromFile = 'C:\\Program
Files\\GeoEco\\ArcGISToolbox\\InstalledFrom.txt'
installedFromX86File = 'C:\\Program Files
(x86)\\GeoEco\\ArcGISToolbox\\InstalledFrom.txt'
f.write('\n')
f.write(os.path.dirname(installedFromFile) + ' : ' +
repr(os.path.isdir(os.path.dirname(installedFromFile))) + '\n')
f.write(installedFromFile + ' : ' + repr(os.path.isfile(installedFromFile)) +
'\n')
if os.path.isfile(installedFromFile):
try:
f2 = file(installedFromFile, 'rU')
f.write(f2.read())
f2.close()
except:
pass
f.write('\n')
f.write(os.path.dirname(installedFromX86File) + ' : ' +
repr(os.path.isfile(os.path.dirname(installedFromX86File))) + '\n')
f.write(installedFromX86File + ' : ' +
repr(os.path.isfile(installedFromX86File)) + '\n')
if os.path.isfile(installedFromX86File):
try:
f2 = file(installedFromX86File, 'rU')
f.write(f2.read())
f2.close()
except:
pass
f.write('\n')
f.write('Trying to import _GeoEcoArcGISHelper\n')
try:
import _GeoEcoArcGISHelper
except:
traceback.print_exc(file=f)
else:
f.write('Successfully imported _GeoEcoArcGISHelper from %s\n' %
sys.modules['_GeoEcoArcGISHelper'].__file__)
f.write('\n')
f.write('Trying to import _winreg\n')
try:
import _winreg
except:
traceback.print_exc(file=f)
else:
def GetRegistryValue(f, hkey, hkeyStr, subkey, valueName=None):
if valueName is None:
f.write('Trying to get the value of %s\\%s\n' % (hkeyStr, subkey))
else:
f.write('Trying to get the %s value of %s\\%s\n' % (valueName,
hkeyStr, subkey))
try:
h = _winreg.OpenKey(hkey, subkey)
try:
try:
if valueName is None:
value = _winreg.QueryValue(h, None)
else:
value = _winreg.QueryValueEx(h, valueName)[0]
except:
traceback.print_exc(file=f)
else:
f.write('The value was: %r\n' % value)
finally:
_winreg.CloseKey(h)
except:
traceback.print_exc(file=f)
GetRegistryValue(f, _winreg.HKEY_CLASSES_ROOT, 'HKEY_CLASSES_ROOT',
'Python.CompiledFile\\shell\\open\\command')
GetRegistryValue(f, _winreg.HKEY_CLASSES_ROOT, 'HKEY_CLASSES_ROOT',
'Python.File\\shell\\open\\command')
GetRegistryValue(f, _winreg.HKEY_LOCAL_MACHINE, 'HKEY_LOCAL_MACHINE',
'SOFTWARE\\Classes\\Python.CompiledFile\\shell\\open\\command')
GetRegistryValue(f, _winreg.HKEY_LOCAL_MACHINE, 'HKEY_LOCAL_MACHINE',
'SOFTWARE\\Classes\\Python.File\\shell\\open\\command')
f.write('\n')
GetRegistryValue(f, _winreg.HKEY_LOCAL_MACHINE, 'HKEY_LOCAL_MACHINE',
'SOFTWARE\\R-core\\R32', 'Current Version')
GetRegistryValue(f, _winreg.HKEY_LOCAL_MACHINE, 'HKEY_LOCAL_MACHINE',
'SOFTWARE\\R-core\\R32', 'InstallPath')
GetRegistryValue(f, _winreg.HKEY_LOCAL_MACHINE, 'HKEY_LOCAL_MACHINE',
'SOFTWARE\\R-core\\R', 'Current Version')
GetRegistryValue(f, _winreg.HKEY_LOCAL_MACHINE, 'HKEY_LOCAL_MACHINE',
'SOFTWARE\\R-core\\R', 'InstallPath')
f.write('\n')
f.write('Trying to import GeoEco.OceanographicAnalysis.Fronts\n')
try:
import GeoEco.OceanographicAnalysis.Fronts
except:
traceback.print_exc(file=f)
else:
f.write('Successfully imported GeoEco.OceanographicAnalysis.Fronts from
%s\n' % sys.modules['GeoEco.OceanographicAnalysis.Fronts'].__file__)
cleanFrontsFile =
os.path.join(os.path.dirname(sys.modules['GeoEco.OceanographicAnalysis.Fronts'].__file__),
'CleanFronts.py')
if os.path.exists(cleanFrontsFile):
f.write('%s exists\n' % cleanFrontsFile)
f.write('Trying to import win32api\n')
try:
import win32api
except:
traceback.print_exc(file=f)
else:
f.write('Calling win32api.FindExecutable on %s\n' %
cleanFrontsFile)
try:
executable = win32api.FindExecutable(cleanFrontsFile,
cleanFrontsFile)[1]
except:
traceback.print_exc(file=f)
else:
f.write('win32api.FindExecutable returned %s\n' % executable)
else:
f.write('%s DOES NOT EXIST' % cleanFrontsFile)
f.write('\n')
f.write('Initializing MGET logging\n')
f.close()
loggingIniContents = u"""
[handlers]
keys=LogFile
[handler_LogFile]
class=FileHandler
formatter=LogFile
args=(u'""" + outputTextFile + """',)
[formatters]
keys=LogFile
[formatter_LogFile]
format=%(asctime)s %(levelname)s %(message)s
[loggers]
keys=root,GeoEco,ArcGIS,COM,DatabaseAccess,Datasets,R
[logger_GeoEco]
level=DEBUG
handlers=LogFile
propagate=0
qualname=GeoEco
[logger_ArcGIS]
level=DEBUG
handlers=LogFile
propagate=0
qualname=GeoEco.ArcGIS
[logger_COM]
level=DEBUG
handlers=LogFile
propagate=0
qualname=GeoEco.COM
[logger_DatabaseAccess]
level=DEBUG
handlers=LogFile
propagate=0
qualname=GeoEco.DatabaseAccess
[logger_Datasets]
level=DEBUG
handlers=LogFile
propagate=0
qualname=GeoEco.Datasets
[logger_R]
level=DEBUG
handlers=LogFile
propagate=0
qualname=GeoEco.R
[logger_root]
level=DEBUG
handlers=LogFile
"""
loggingIniPath = os.path.join(os.path.dirname(__file__),
os.path.splitext(os.path.basename(__file__))[0] + '_Logging.ini')
fLoggingIni = open(loggingIniPath, 'w')
try:
fLoggingIni.write(loggingIniContents)
finally:
fLoggingIni.close()
try:
from GeoEco.Logging import Logger
Logger.Initialize(loggingConfigFile=unicode(loggingIniPath))
finally:
os.remove(loggingIniPath)
Logger.Info('Trying to access R')
try:
from GeoEco.R import R, RDependency
d = RDependency(2, 5, 0)
d.Initialize()
r = R.GetInterpreter()
Logger.Info('Trying 1+1 with R.')
r('print(1+1)')
except:
Logger.LogExceptionAsError()
f.close()
#raw_input()
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