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[mget-help] Error loading current data - larval dispersal simulation


Chronological Thread 
  • From: Virginie Marques <>
  • To:
  • Subject: [mget-help] Error loading current data - larval dispersal simulation
  • Date: Tue, 24 Jan 2017 16:20:00 +0100

Hi MGET,

I am currently working on reef fish connectivity and I encounter a problem while loading the current data from HYCOM GLBa 0.08. At the moment, I only ran the simulation not on my own data but on the subset from the data you provided on your website for a trial, from Schill et al 2015. 

Here is the entire error code I got and I don't know how to fix it, if the problem is from my arcgis software (10.1) or a step I do wrong. 

Executing: LarvalDispersalLoadHYCOMGLBa0084DEquatorialCurrentsIntoSimulation C:\Users\David\Documents\Virginie\MGET_Simu\Simu1\test1 20/09/2013 21/09/2013 0 false CUBIC Del2a 60 120 #
Start Time: Tue Jan 24 15:55:07 2017
Running script LarvalDispersalLoadHYCOMGLBa0084DEquatorialCurrentsIntoSimulation...
Querying time and depth slices of u grid of the equatorial region of the HYCOM + NCODA Global 1/12 degree Analysis (GLBa0.08), clipped to indices tMin = 1828, tMax = 1829, zMax = 0.
Query complete: 0:00:00 elapsed, 2 datasets found, 0:00:00.001500 per dataset.
Importing 2 datasets into ArcGIS Folder or Workspace C:\Users\David\Documents\Virginie\MGET_Simu\Simu1\test1\OriginalHYCOMCurrents with mode "add".
Checking for existing destination datasets.
Finished checking: 0:00:00 elapsed, 2 datasets checked, 0:00:00.000500 per dataset.
0 destination datasets already exist. Importing 2 datasets.
Import in progress: 0:02:56 elapsed, 1 datasets imported, 0:02:56.483287 per dataset, 1 remaining, estimated completion time: unknown; more progress needed.
Import complete: 0:05:20 elapsed, 2 datasets imported, 0:02:40.076500 per dataset.
Querying time and depth slices of v grid of the equatorial region of the HYCOM + NCODA Global 1/12 degree Analysis (GLBa0.08), clipped to indices tMin = 1828, tMax = 1829, zMax = 0.
Query complete: 0:00:00 elapsed, 2 datasets found, 0:00:00.001000 per dataset.
Importing 2 datasets into ArcGIS Folder C:\Users\David\Documents\Virginie\MGET_Simu\Simu1\test1\OriginalHYCOMCurrents with mode "add".
Checking for existing destination datasets.
Finished checking: 0:00:00 elapsed, 2 datasets checked, 0:00:00 per dataset.
0 destination datasets already exist. Importing 2 datasets.
Import in progress: 0:03:11 elapsed, 1 datasets imported, 0:03:11.967623 per dataset, 1 remaining, estimated completion time: unknown; more progress needed.
Import complete: 0:06:56 elapsed, 2 datasets imported, 0:03:28.457500 per dataset.
Finding ArcGIS rasters and inserting rows into table "work": workspace="C:\Users\David\Documents\Virginie\MGET_Simu\Simu1\test1\OriginalHYCOMCurrents", wildcard="*.img", searchTree=True, rasterType="None"
Finished inserting rows: 0:00:00 elapsed, 4 rows inserted, 0:00:00.065000 per row.
Updating field "outputRaster" in table "work"...
Update complete: 0:00:00 elapsed, 4 rows updated, 0 deleted, 0 unchanged, 0:00:00.000250 per row.
Querying the table "work" to build lists of inputs and outputs...
Query complete: 0:00:00 elapsed, 4 rows retrieved, 0:00:00 per row.
Checking for existing outputs for each input...
Finished checking for existing outputs: 0:00:00 elapsed, 4 inputs checked, 0:00:00.026000 per input.
Processing 4 inputs...
ERROR 010092: Invalid output extent.
Failed to execute (ExtractByMask).

Traceback (most recent call last):
  File "C:\Program Files\GeoEco\ArcGISToolbox\Scripts\LarvalDispersalLoadHYCOMGLBa0084DEquatorialCurrentsIntoSimulation.py", line 5, in <module>
    ExecuteMethodFromCommandLineAsArcGISTool('GeoEco.Connectivity.LarvalDispersal', 'LarvalDispersal', 'LoadHYCOMGLBa0084DEquatorialCurrentsIntoSimulation')
  File "C:\Python27\ArcGIS10.1\lib\site-packages\GeoEco\ArcGISScripts.py", line 210, in ExecuteMethodFromCommandLineAsArcGISTool
    exec sourceCode in globals(), locals()
  File "<string>", line 1, in <module>
  File "C:\Python27\ArcGIS10.1\lib\site-packages\GeoEco\Connectivity\LarvalDispersal.py", line 311, in LoadHYCOMGLBa0084DEquatorialCurrentsIntoSimulation
    cls._FinishLoadingCurrents(simulationDirectory, scp, thisCurrentsProduct, u'Center', 86400, hycomCurrentsDirectory, resamplingTechnique, interpolationMethod)
  File "C:\Python27\ArcGIS10.1\lib\site-packages\GeoEco\Connectivity\LarvalDispersal.py", line 402, in _FinishLoadingCurrents
    skipExisting=True)
  File "<string>", line 7, in FindAndProjectRastersToTemplate
  File "C:\Python27\ArcGIS10.1\lib\site-packages\GeoEco\BatchProcessing.py", line 2161, in ExecuteFindAndProcessMethod
    boundProcessTableMethod(*tuple(argList))
  File "<string>", line 5, in ProjectToTemplateTable
  File "C:\Python27\ArcGIS10.1\lib\site-packages\GeoEco\BatchProcessing.py", line 1295, in ExecuteProcessTableMethod
    results = boundProcessListMethod(*tuple(argList))
  File "<string>", line 5, in ProjectToTemplateList
  File "C:\Python27\ArcGIS10.1\lib\site-packages\GeoEco\BatchProcessing.py", line 912, in ExecuteProcessListMethod
    result = boundMethod(*tuple(argList))
  File "C:\Python27\ArcGIS10.1\lib\site-packages\GeoEco\DataManagement\ArcGISRasters.py", line 1910, in ProjectToTemplate
    gp.ExtractByMask_sa(projectedRaster, maskRaster, outputRaster)
  File "<string>", line 2, in ExtractByMask_sa
  File "C:\Python27\ArcGIS10.1\lib\site-packages\GeoEco\ArcGIS.py", line 1317, in _InvokeMethod
    raise ArcGISError(_(u'The ArcGIS %(tool)s geoprocessing tool failed when given the parameters %(params)s and reported %(error)s: %(msg)s') % {u'tool': methodName, u'params': inspect.formatargvalues(_args, _varargs, _varkw, _locals), u'error': e.__class__.__name__, u'msg': unicode(e)})
ArcGISError: The ArcGIS ExtractByMask_sa geoprocessing tool failed when given the parameters (*args=('C:\\Temp\\GeoEcoTemp_David\\tmp1ejf5v\\infilled.img', 'C:\\Temp\\GeoEcoTemp_David\\tmpmaazmr\\water_mask', 'C:\\Users\\David\\Documents\\Virginie\\MGET_Simu\\Simu1\\test1\\Currents\\u\\2013\\u20132630000.img')) and reported ExecuteError: ERROR 010092: Invalid output extent.
Failed to execute (ExtractByMask).


Failed to execute (LarvalDispersalLoadHYCOMGLBa0084DEquatorialCurrentsIntoSimulation).
Failed at Tue Jan 24 16:07:32 2017 (Elapsed Time: 12 minutes 25 seconds)


Thanks in advance, 

Virginie 



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