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From: Yue Chan <>
To:
Subject: [mget-help] Coral Connectivity tool python failed
Date: Tue, 18 Nov 2014 06:23:00 -0500
Hi there,

I've been trying to run the coral connectivity tool, but I continually run into this:

Executing: CoralReefConnectivityRunSimulation \\casfsa.bu.edu\class_folders\classes_330\bi_378\students\y00ty00t\data\CoralReefConnectivity\CoralReefConnectivity2010 \\casfsa.bu.edu\class_folders\classes_330\bi_378\students\y00ty00t\data\CoralReefConnectivity\CoralReefConnectivityAnalysis 6/1/2010 2 0.023 10 10000 0.1 25 # #
Start Time: Tue Nov 18 06:07:01 2014
Running script CoralReefConnectivityRunSimulation...
Reading coral reef data...
Query complete: 0:00:03 elapsed, 17 rows retrieved, 0:00:00.189764 per row.
Reading 2 ocean currents images...
Still reading: 0:02:55 elapsed, 1 images read, 0:02:55.184856 per image, 1 remaining, estimated completion time: unknown; more progress needed.
Finished reading: 0:05:34 elapsed, 2 images read, 0:02:47.221000 per image.
The maximum Courant number is 0.124078, which is less than or equal to 0.25. The simulation is likely to be numerically stable.
Warning: The ocean currents images are missing data for some cells flagged as
containing reefs. This will affect the accuracy of the simulation. The
simulator will assume the ocean currents have a velocity of zero in these
cells. Larvae can only exit these cells via diffusion. These cells may retain
larvae in a manner that is not realistic. The IDs of the affected reefs are:
11, 12, 13, 14, 15, 16, 21, 22, 23, 24, 25, 26, 32, 33, 34, 35, 36
Warning: Size vector should be a row vector with integer elements.
Warning: Size vector should be a row vector with integer elements.
python.exe: RuntimeError: ??? Maximum variable size allowed by the program is exceeded.
python.exe:
python.exe: Error in ==> DisperseLarvae at 133
RuntimeError: python.exe returned exit code 1, indicating failure.
The following consequences resulted from the original error:
Execution of C:\Python27\ArcGIS10.2\python.exe failed.

Traceback (most recent call last):
  File "C:\Program Files\GeoEco\ArcGISToolbox\Scripts\CoralReefConnectivityRunSimulation.py", line 5, in <module>
    ExecuteMethodFromCommandLineAsArcGISTool('GeoEco.Connectivity.CoralReefConnectivity', 'CoralReefConnectivity', 'RunSimulation')
  File "C:\Python27\ArcGIS10.2\lib\site-packages\GeoEco\ArcGISScripts.py", line 210, in ExecuteMethodFromCommandLineAsArcGISTool
    exec sourceCode in globals(), locals()
  File "<string>", line 1, in <module>
  File "C:\Python27\ArcGIS10.2\lib\site-packages\GeoEco\Connectivity\CoralReefConnectivity.py", line 767, in RunSimulation
    maxRunTime=None)
  File "C:\Python27\ArcGIS10.2\lib\site-packages\GeoEco\DataManagement\Processes.py", line 575, in ExecuteProgram
    process.Execute()
  File "C:\Python27\ArcGIS10.2\lib\site-packages\GeoEco\DataManagement\Processes.py", line 498, in Execute
    Logger.RaiseException(RuntimeError(_(u'%(name)s returned exit code %(code)i, indicating failure.') % {u'name' : programName, u'code' : self.ExitCode}))
  File "C:\Python27\ArcGIS10.2\lib\site-packages\GeoEco\Logging.py", line 104, in RaiseException
    raise exception
RuntimeError: python.exe returned exit code 1, indicating failure.

Failed to execute (CoralReefConnectivityRunSimulation).
Failed at Tue Nov 18 06:18:18 2014 (Elapsed Time: 11 minutes 16 seconds)


I've reinstalled arcmap, MGET, and everything else but it still gives me the same message. I don't have duplicate python versions, and the pythonwin32 version matches with my python version. Everything is in 32bit. What am I missing? I run ArcMap 10.2. 

-Yue Chan
  • [mget-help] Coral Connectivity tool python failedYue Chan
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